Workflow

End-to-end steps

1. Parameters – set growth/spacing/branching knobs (FractalTreeParameters).

2. Mesh prep – load endocardium, run detect_boundary(), optionally compute_uvscaling().

3. Generate – instantiate FractalTree and call grow_tree() (projection+collision inside).

4. Build – create PurkinjeTree from nodes/connectivity/end nodes.

5. Activate – compute activation (e.g., activate_fim()) and PMJs as needed.

6. Save/Export – write network, mesh outputs, and PMJ files.

Flow figure

Fig. 7 Create → Activate → Save workflow (see Fig. 4 for the algorithm loop).